Blog

December 28, 2023

anti microbial resistance

SHIP: detecting gene transfer between plasmids that confers antimicrobial resistance
Continue reading: SHIP: detecting gene transfer between plasmids that confers antimicrobial resistance
December 28, 2023

monte carlo simulation

GPU-enhanced multiscale Monte Carlo chromatin 3D modelling is known as cudaMMC.
Continue reading: GPU-enhanced multiscale Monte Carlo chromatin 3D modelling is known as cudaMMC.
December 28, 2023

multiple sequence alignment

DCAlign v1.0: Co-evolution models and informed priors are used to align biological sequences
Continue reading: DCAlign v1.0: Co-evolution models and informed priors are used to align biological sequences
December 28, 2023

single cell data

From single-cell data, cell connectivity-guided trajectory inference
Continue reading: From single-cell data, cell connectivity-guided trajectory inference
December 28, 2023

genome analysis

Flexible protein structural alignment using Protein Units (ICARUS)
Continue reading: Flexible protein structural alignment using Protein Units (ICARUS)
December 28, 2023

bacterial plasmid software

An automated bacterial plasmid assembly tool called plassembler.
Continue reading: An automated bacterial plasmid assembly tool called plassembler.
December 28, 2023

Gene expression

Measures based on dicodon for modelling gene expression
Continue reading: Measures based on dicodon for modelling gene expression
December 28, 2023

drug discovery

Optimised graph neural network for predicting protein-ligand binding affinity called GraphscoreDTA
Continue reading: Optimised graph neural network for predicting protein-ligand binding affinity called GraphscoreDTA
December 28, 2023

proteins homology

PepGM: a probabilistic graphical model for viral proteome samples’ taxonomy inference and related confidence scores
Continue reading: PepGM: a probabilistic graphical model for viral proteome samples’ taxonomy inference and related confidence scores
December 28, 2023

hidden markov model

Using the Python package dipwmsearch, you can look for di-PWM patterns.
Continue reading: Using the Python package dipwmsearch, you can look for di-PWM patterns.