Blog

November 12, 2024

Functional Analysis using R

scToppR: a R interface to ToppGene that is easy to code
Continue reading: scToppR: a R interface to ToppGene that is easy to code
August 27, 2024

Gene Editing

DeepCRISTL: utilizing deep transfer learning to forecast the efficacy of CRISPR/Cas9 on-target editing within particular cellular environments
Continue reading: DeepCRISTL: utilizing deep transfer learning to forecast the efficacy of CRISPR/Cas9 on-target editing within particular cellular environments
July 28, 2024

Promoter Analysis

In Arabidopsis thaliana, optimising data integration enhances gene regulatory network inference.
Continue reading: In Arabidopsis thaliana, optimising data integration enhances gene regulatory network inference.
June 6, 2024

plasmid genome analysis

Plasmid Cloud Assembly Tool, or PlasCAT
Continue reading: Plasmid Cloud Assembly Tool, or PlasCAT
March 25, 2024

protein function prediction

An understanding of the underlying workings of transformer models for the prediction of protein function
Continue reading: An understanding of the underlying workings of transformer models for the prediction of protein function
March 1, 2024

protein function prediction

Using relational learning to interpret Saccharomyces cerevisiae protein abundance
Continue reading: Using relational learning to interpret Saccharomyces cerevisiae protein abundance
January 23, 2024

data analysis

SciDataFlow: an instrument to enhance the data flow via science
Continue reading: SciDataFlow: an instrument to enhance the data flow via science
December 28, 2023

anti microbial resistance

SHIP: detecting gene transfer between plasmids that confers antimicrobial resistance
Continue reading: SHIP: detecting gene transfer between plasmids that confers antimicrobial resistance
December 28, 2023

monte carlo simulation

GPU-enhanced multiscale Monte Carlo chromatin 3D modelling is known as cudaMMC.
Continue reading: GPU-enhanced multiscale Monte Carlo chromatin 3D modelling is known as cudaMMC.
December 28, 2023

multiple sequence alignment

DCAlign v1.0: Co-evolution models and informed priors are used to align biological sequences
Continue reading: DCAlign v1.0: Co-evolution models and informed priors are used to align biological sequences