Analysis of microbial genomes has been of interest to biologist for long. The visualization of microbial communities through command line or through shiny package can been done and so they have been included in this system. The MicrobiomeExplorer package takes input in various formats like raw count tables etc.
The package has been developed in R language.The workflow of the package has been explained in Fig 1.
Fig 1: Workflow of the package
The package is available at the following URL:https://github.com/zoecastillo/microbiomeExplorer
Reference:
Reeder J. et. al. (2021) MicrobiomeExplorer: an R package for the analysis and visualization of microbial communities. Bioinformatics 37(9):1317-1318.