Recently published Biological databases 2020

ABCD 

https://web.expasy.org/abcd 

AntiBodies chemically defined 

Alliance of Genome Resources 

https://www.alliancegenome.org 

Data united across model organisms 

Animal-ImputeDB 

http://gong_lab.hzau.edu.cn/Animal_ImputeDB 

Reference panels and imputation methods for animal genomes 

APAatlas 

https://hanlab.uth.edu/apa 

Human alternative polyadenylation 

BacFITBase 

http://www.tartaglialab.com/bacfitbase/ 

Bacterial genes relevant to host infection 

BBCancer 

http://bbcancer.renlab.org 

Blood-based biomarkers for cancer 

CancerGeneNet 

https://signor.uniroma2.it/CancerGeneNet 

Paths from cancer mutations to ‘Hallmark phenotypes’ 

CancerTracer 

http://cailab.labshare.cn/cancertracer 

Tumor heterogeneity in individual patients 

CausalDB 

http://mulinlab.tmu.edu.cn/causaldb 

Predicted causal variants from GWAS 

CFEA 

www.bio-data.cn/CFEA 

Cell-free epigenome atlas 

ChlamDB 

https://www.chlamdb.ch 

Comparative genomics of the Chlamydiae phylum and the PVC superphylum 

CRISPRCasdb 

https://crisprcas.i2bc.paris-saclay.fr 

CRISPR arrays and Cas proteins 

DNMIVD 

http://www.unimd.org/dnmivd 

DNA methylation and cancer 

DrLLPS 

http://llps.biocuckoo.cn 

Liquid–liquid phase separation of proteins 

DrugCombDB 

http://drugcombdb.denglab.org 

Drug combination data 

ENdb 

http://www.licpathway.net/ENdb 

Experimentally supported enhances in human and mouse 

EuRBPDB 

http://EuRBPDB.syshospital.org 

Eukaryotic RNA binding proteins 

EWAS Data Hub 

http://bigd.big.ac.cn/ewas/datahub 

DNA methylation array data and metadata 

ExonSkipDB 

https://ccsm.uth.edu/ExonSkipDB 

Exon skipping 

FoldamerDB 

http://foldamerdb.ttk.mta.hu 

Peptidic foldamers 

Gene4Denovo 

http://genemed.tech/gene4denovo 

Human de novo mutations 

Genus 

http://genus.fuw.edu.pl 

Topological characteristics of biomolecular structures 

Gephebase 

https://www.gephebase.org 

Genotype–phenotype relationships in eukaryotes 

GMrepo 

https://gmrepo.humangut.info 

Human gut metagenomics data 

gutMDisorder 

http://bio-annotation.cn/gutMDisorder 

Dysbiosis of the gut microbiota 

GWAS Atlas 

http://bigd.big.ac.cn/gwas 

GWAS studies across seven plants and two animals 

KnockTF 

http://www.licpathway.net/KnockTF 

Gene expression following TF knockdown/knockout 

LLPSDB 

http://bio-comp.ucas.ac.cn/LLPSDB 

Liquid–liquid phase separation of proteins 

LnCeVar 

http://www.bio-bigdata.net/LnCeVar 

lncRNA SNPs affecting ceRNA action 

LncTarD 

http://bio-bigdata.hrbmu.edu.cn/LncTarD 

lncRNA-mediated regulatory mechanisms and disease 

MaGenDB 

http://magen.whu.edu.cn 

Functional genomics hub of Malvaceae eg cotton, cacao 

malaria.tools 

http://malaria.tools 

Plasmodium co-expression and co-function networks 

MBKbase 

http://www.mbkbase.org 

Plant Molecular Breeding Knowledgebase 

ncRNA-eQTL 

http://ibi.hzau.edu.cn/ncRNA-eQTL 

eQTL analysis of ncRNAs 

OGRDB 

https://ogrdb.airr-community.org 

Open germline receptor database 

oRNAment 

http://rnabiology.ircm.qc.ca/oRNAment 

Predicted RBP binding sites in complete transcriptomes 

PADS Arsenal 

http://bigd.big.ac.cn/padsarsenal 

Prokaryotic antiviral defense systems 

PathBank 

http://www.pathbank.org 

Pathways in model organisms 

PGG.Han 

http://www.pgghan.org or https://www.hanchinesegenomes.org 

Han Chinese genomes 

PhaSepDB 

http://db.phasep.pro 

Phase separation related proteins 

PhaSepPro 

http://phasepro.elte.hu 

Phase separation related proteins 

PhenoModifier 

https://www.biosino.org/PhenoModifier 

Genetic modifiers of human disorders 

PDBe-KB 

http://pdbe-kb.org 

Structural and functional annotations of the PDB 

PmiREN 

http://www.pmiren.com 

Plant MicroRNA Encyclopedia 

Pro-Carb 

http://structure.bioc.cam.ac.uk/procarb 

Protein–carbohydrate interactions 

QTLbase 

http://mulinlab.org/qtlbase 

Quantitative Trait Loci across human phenotypes 

SEAweb 

http://sea.ims.bio 

Small RNA Expression Atlas 

snoDB 

http://scottgroup.med.usherbrooke.ca/snoDB 

Human snoRNAs 

SNP2APA 

http://gong_lab.hzau.edu.cn/SNP2APA 

SNPs and alternative polyadenylation in cancer 

SpatialDB 

https://spatialomics.org/SpatialDB/ 

Spatially resolved transcriptome 

SyntDB 

http://syntdb.amu.edu.pl 

lncRNAs and their evolutionary relationships in primates 

TerrestrialMetagenomeDB 

https://webapp.ufz.de/tmdb 

Terrestrial metagenome metadata 

Thera-SAbDab 

http://opig.stats.ox.ac.uk/webapps/therasabdab 

Therapeutic antibodies 

T-psi-C 

http://tpsic.igcz.poznan.pl 

Experimentally determined tRNA sequences 

TSEA-DB 

https://bioinfo.uth.edu/TSEADB 

Tissue specificity of GWAS traits and phenotypes 

VARIDT 

https://db.idrblab.org/varidt 

Variability of Drug Transporter Database 

VDJbase 

https://www.VDJbase.org 

Genotype and haplotype data from AIRR sequencing 

VISDB 

https://bioinfo.uth.edu/VISDB/index.php 

Virus Integration Site DataBase 

YEASTRACT+ 

http://yeastract-plus.org 

Transcription regulation in yeasts