C3D helps in finding 3D interactions between Cis-Regulatory Elements at the Genomic level

                   The Chromatin structure plays a major role in influencing the binding of proteins to


cis-elements.The type of 3D conformation that the DNA assumes, causes the expression of


genes tobe switched on or off. Mehdi T. et. al. (2019) in their recent article used measures like


DNA aseI hypersensitivity to develop a computational tool called C3D .

                

                 The software predicts the relation between promoters and distal region in certain cell


types. The source code is freely available at the following Git-hub website https://github.com


/LupienLabOrganization/C3D


 

Reference:

 

Mehdi T. et al. (2019) C3D: A tool to predict 3D genomic interactions between cis- regulatory


elements. Bioinformatics 35(5) 877-879.

 

 

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